On 2026-04-05, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #574
Quality Control
- multiqc was updated to 3dd49be3f7d3
Computer Vision
- sam3_semantic_segmentation was updated to 0bc5b1bfa81a
Metagenomic Analysis
- genomad_end_to_end was updated to b405bd1eff93
Statistics
- saqc was updated to 9e5eb2e6c614
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Convert Formats
- msconvert was updated to 8edfcbf32616
Proteomics
- maxquant was updated to 022e886e8f94
- peptideshaker was updated to c9b13d4069c8
Imaging
- split_image was updated to 7191fd16988f
Annotation
- glimmer_acgt_content was updated to 0d457c894b9f
- glimmer_extract was updated to 81d0b66990d2
- glimmer_gbk_to_orf was updated to 44dc09edd97b
- glimmer_long_orfs was updated to d5b3e82a979f
- angsd was updated to 7b0e59047b2f
- bctools_convert_to_binary_barcode was updated to 4f4c5a4dda59
- bctools_extract_alignment_ends was updated to 0be29a221b16
- bctools_extract_barcodes was updated to ceb779d5be5b
- bctools_extract_crosslinked_nucleotides was updated to 12a5e6fa850e
- bctools_merge_pcr_duplicates was updated to 04e67d8245fe
- bctools_remove_spurious_events was updated to 308ab6387c75
- bctools_remove_tail was updated to 6979701451c3
- bicodon_counts_from_fasta was updated to e13169dca7c8
- codon_freq_from_bicodons was updated to cc5a776acd47
- find_nested_alt_orfs was updated to 14f4c7a8a962
- hicstuff_pipeline was updated to 7ffc3748ffde
- mist_call was updated to e4579b48d9ab
- mist_dists was updated to 372a2ff0e14d
- neighbors was updated to e06a5c9e97e2
- psauron was updated to 085451872bcc
- sexdeterrmine was updated to cf3d9775d7ae
- tb_profiler_profile was updated to 97a96d2ce8ea
- ucsc_maffilter was updated to fb6c3ba3a084
Assembly
- vgp_chromosome_assignment was updated to 8926e6cd9071
- vgp_sak_generation was updated to 8fbdd799f24c
- vgp_split_agp was updated to da61829dc3be
FASTA/FASTQ
- bbtools_bbduk was updated to 428de92eac6b
- bbtools_bbmerge was updated to f8734e69f645
- bbtools_bbnorm was updated to c80190b3ff02
- bbtools_tadpole was updated to 8deeb4c5448b
- poretools_events was updated to daf8518d243a
- poretools_extract was updated to 08064da7b7fb
- poretools_hist was updated to d1805f9c4c82
- poretools_nucdist was updated to 5c4fa65f5733
- poretools_occupancy was updated to 0433aad600e9
- poretools_qualdist was updated to 72dfdbfab3cc
- poretools_qualpos was updated to 626b6c2be5c2
- poretools_squiggle was updated to 26e6c9362b7b
- poretools_stats was updated to c1cbe2575d32
- poretools_tabular was updated to 5f5f1da94d7f
- poretools_times was updated to 107124859931
- poretools_winner was updated to 6d93709247c7
- poretools_yield_plot was updated to c5c5a3e84989
Genome editing
- mageck_count was updated to e329d44424d7
- mageck_gsea was updated to b946929d31c4
- mageck_mle was updated to 26126538a86f
- mageck_pathway was updated to 39a996d44e16
- mageck_test was updated to 9b4f4533c9ee
Graph/Display Data
- ggplot2_barplot was updated to 41e9114cc7cd
- ggplot2_boxplot was updated to 653803fab921
- gwastools_manhattan_plot was updated to c4bf5e913c2e
- qq_manhattan was updated to 7a8a21c5a57f
Mapping
- bbtools_bbmap was updated to 23d04eabbac5
- fastga was updated to 8f821f9b8567
- wfmash was updated to 45ff1e03f88a
Phylogenetics
- hyphy_b_still was updated to 0afe4b17fb2c
- hyphy_cln was updated to bf1ca3de3a76
- hyphy_infer_stasis_clusters was updated to 8a13bf04ca1f
RNA Analysis
- describe_samples was updated to 3b36efd62b3e
- trinity_analyze_diff_expr was updated to 9ff3765e7172
- trinity_define_clusters_by_cutting_tree was updated to 65e7dea767ea
- trinity_samples_qccheck was updated to 04bb8bb7c198
Text Manipulation
- sqlite_to_tabular was updated to c4d18aa4ec4a
Variant Calling
- bbtools_callvariants was updated to 68564cf83cb0
- bcftools_plugin_counts was updated to ade0d3c3ec1c
- bcftools_plugin_fill_an_ac was updated to 69ad30be1a8b
- bcftools_plugin_fill_tags was updated to fea209b23f19
- bcftools_plugin_fixploidy was updated to f203ea355bc8
- bcftools_plugin_impute_info was updated to 42345cc2c76e
- bcftools_plugin_missing2ref was updated to 793ae03deb13
- bcftools_query_list_samples was updated to fb631fd605e8
- gvcftools_extract_variants was updated to bf8841b0a6b0
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
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