On 2026-05-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #582
Quality Control
- multiqc was updated to 371299578b8e
Population Genomics
- population_genetics_stats was updated to a97a73f95025
Metabolomics
- rcx_tk was updated to 648f82934b56
Metagenomic Analysis
- checkm2 was updated to 24313e0ff049
- mgnify_pipelines_toolkit_classify_var_regions was updated to f13bead2278d
- mgnify_pipelines_toolkit_make_asv_count_table was updated to c359ab0d2d11
- mgnify_pipelines_toolkit_mapseq_to_asv_table was updated to 96048deae8ba
- mgnify_pipelines_toolkit_permute_primers was updated to 44951788b7e9
- mgnify_pipelines_toolkit_primer_val_classification was updated to 4f26041a8e5b
- mgnify_pipelines_toolkit_rev_comp_se_primers was updated to 44a9cccf62e6
- staramr was updated to 85b2bec21695
- phi_toolkit_report was updated to 8065e0028a60
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Machine Learning
- rag_retriever was updated to 1da5c7994686
Annotation
- abricate was updated to 31f58ec0459a
- amrfinderplus was updated to 573cfe217474
FASTA/FASTQ
- falco was updated to f48b35baf365
- fastp was updated to 4557b2da9e7f
Graph/Display Data
- volcanoplot was updated to 3d5b9e4df7ba
Phylogenetics
- fastreer_dist2tree was updated to 0c0481ef9a99
- fastreer_fasta2dist was updated to a9c255c50d83
- fastreer_vcf2dist was updated to dc5fbb86dd4d
- fastreer_vcf2tree was updated to 20dfb6d71724
- raxmlng was updated to 376c7db05800
RNA Analysis
- idr was updated to ead35c868b99
SAM/BAM
- mosdepth was updated to 4413217d872c
Text Manipulation
- dos2unix was updated to d84dda3ad723
Variant Calling
- alphagenome_interval_predictor was updated to 9bcf910e60b0
- alphagenome_ism_scanner was updated to c90b3714e8c1
- alphagenome_sequence_predictor was updated to 89c19cb645bf
- alphagenome_variant_effect was updated to 9400c28fb60c
- alphagenome_variant_scorer was updated to d4602a4b5b7c
None
- data_manager_build_kraken2_database was updated to 8367be242f35
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
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