On 2026-05-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #583

Join, Subtract and Group

• datamash_transpose was updated to a884245d3b3a

DNA Metabarcoding

• obi_annotate was updated to c96ce8ed191c
• obi_clean was updated to f5e899be558b
• obi_convert was updated to deaac9e831a4
• obi_grep was updated to 98bec443b342
• obi_multiplex was updated to f288c404742b
• obi_pairing was updated to f277badb9b30
• obi_uniq was updated to 9eded74a3d03

Population Genomics

• effective_population_size_ld_method was updated to 88903ed1f637

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

Proteomics

• metaquantome_db was updated to 491ee27f3e45
• metaquantome_expand was updated to f06a40fc75a3
• metaquantome_filter was updated to e5ced3896e9c
• metaquantome_sample was updated to d186ebe499f5
• metaquantome_stat was updated to ad0fb0956559
• metaquantome_viz was updated to 2fb1aab3d444
• peptideshaker was updated to c9b13d4069c8

Machine Learning

• llm_hub was updated to 157674736595
• rag_retriever was updated to 17a8d7cc176b
• tabpfn was updated to ec6df5e22055

Data Managers

• data_manager_qiime_database_downloader was updated to ed86a8f378c8

Annotation

• bctools_merge_pcr_duplicates was updated to 04e67d8245fe
• bctools_remove_spurious_events was updated to 308ab6387c75
• staramr was updated to 146b508457e8
• tiberius was updated to c0afea1f4684

Astronomy

• gwtc_analysis was updated to 9f7b3250a2fe

Convert Formats

• biom_add_metadata was updated to afa26d1f6809
• biom_convert was updated to b3858ab7f598
• biom_from_uc was updated to 4869ced5c43b
• biom_normalize_table was updated to d8c14bfe6723
• biom_subset_table was updated to f6985730ab47
• biom_summarize_table was updated to 011c5389297a

Genome editing

• mageck_pathway was updated to 39a996d44e16

Get Data

• ncbi_datasets was updated to 2a2364765752

Graph/Display Data

• calculate_contrast_threshold was updated to 7371bb087d86

Imaging

• page_dewarp was updated to b47beced512f

None

• data_manager_build_bracken_database was updated to 174a754bd3b6
• data_manager_bwameth_index_builder was updated to 129d5a74ca16
• data_manager_diamond_database_builder was updated to 4a08b7b76b78
• data_manager_mapseq was updated to b837e6ef4e3e

Metagenomic Analysis

• metabat2 was updated to c63e45a190b5
• metabat2_jgi_summarize_bam_contig_depths was updated to 45f6d77d37b7

Other Tools

• rpfba was updated to 79094fd479b2

Phylogenetics

• fastreer_dist2tree was updated to 6f04f22bba43
• fastreer_fasta2dist was updated to cb7eb614c1cb
• fastreer_vcf2dist was updated to 9a5686edd8e1
• fastreer_vcf2tree was updated to 030d802b3706
• hyphy_infer_stasis_clusters was updated to 8a13bf04ca1f
• raxmlng was updated to b1c5f855ac6a

RNA Analysis

• seurat_preprocessing was updated to 214546df3ecd

Spatial Omics

• spatialdata_operation was updated to c9077cc6c532

Variant Calling

• allegro was updated to 272f21f350aa
• alphagenome_interval_predictor was updated to 9bcf910e60b0
• alphagenome_ism_scanner was updated to c90b3714e8c1
• alphagenome_sequence_predictor was updated to 89c19cb645bf
• alphagenome_variant_effect was updated to 9400c28fb60c
• alphagenome_variant_scorer was updated to d4602a4b5b7c
• bcftools_plugin_counts was updated to ade0d3c3ec1c