Scientific research using & citing the European Galaxy server


This is the list of scientific publications that cited the European Galaxy instance sorted by year. Please help us to support this project with your acknowledgement.

2024

  1. Bahrami,B. et al. (2024) Integrated analysis of transcriptome and epigenome reveals ENSR00000272060 as a potential biomarker in gastric cancer. Epigenomics, 16, 159–173.
  2. Bastide,H. et al. (2024) The genome of the blind bee louse fly reveals deep convergences with its social host and illuminates Drosophila origins. Current Biology.
  3. Boeckman,J. et al. (2024) Phage DNA Extraction, Genome Assembly, and Genome Closure. In, Tumban,E. (ed), Bacteriophages: Methods and Protocols, Methods in Molecular Biology. Springer US, New York, NY, pp. 125–144.
  4. Deng,L. et al. (2024) Atlas of cardiac endothelial cell enhancer elements linking the mineralocorticoid receptor to pathological gene expression. Science Advances, 10, eadj5101.
  5. Gress,C. et al. (2024) Transcriptomic characterization of the human segmental endotoxin challenge model. Scientific Reports, 14, 1721.
  6. Ishola,O.A. et al. (2024) Comparative Metagenomic Analysis of Bacteriophages and Prophages in Gnotobiotic Mouse Models. Microorganisms, 12, 255.
  7. Kruse,P. et al. (2024) Synaptopodin Regulates Denervation-Induced Plasticity at Hippocampal Mossy Fiber Synapses. Cells, 13, 114.
  8. Larivière,D. et al. (2024) Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology, 1–4.
  9. Meem,M.H. et al. (2024) Exploring the anticancer and antibacterial potential of naphthoquinone derivatives: a comprehensive computational investigation. Frontiers in Chemistry, 12.
  10. Rahman,N. et al. (2024) Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses. Microbial Genomics, 10, 001188.
  11. Royaux,C. et al. (2024) Genetic variability of New Caledonian Boeckella De Guerne & Richard, 1889 (Copepoda: Calanoida), with the description of a new species. Journal of Crustacean Biology, 44, ruae001.
  12. Salapa,H.E. et al. (2024) hnRNP A1 dysfunction alters RNA splicing and drives neurodegeneration in multiple sclerosis (MS). Nature Communications, 15, 356.
  13. Singh,P. et al. (2024) Biophysical and structural characterization of tetramethrin serum protein complex and its toxicological implications. Journal of Molecular Recognition, n/a, e3076.
  14. Strateva,T. and Peykov,S. (2024) First detection of a cefiderocol-resistant and extensively drug-resistant Acinetobacter baumannii clinical isolate in Bulgaria. Acta Microbiologica et Immunologica Hungarica, -1.
  15. Wight,J. et al. (2024) Anthropogenic contamination sources drive differences in antimicrobial-resistant Escherichia coli in three urban lakes. Applied and Environmental Microbiology, 0, e01809–23.

2023

  1. В,С.М. et al. (2023) ВЫЧИСЛИТЕЛЬНЫЙ АНАЛИЗ СТРУКТУРНОГО CОСТАВА ГЕНОМОВ КОРОНАВИРУСОВ. Доклады Белорусского государственного университета информатики и радиоэлектроники, 21, 104–113.
  2. Agboli,E. et al. (2023) Interaction of Mesonivirus and Negevirus with arboviruses and the RNAi response in Culex tarsalis-derived cells. Parasites & Vectors, 16, 361.
  3. Ahmad,N. et al. (2023) Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. Journal of Fungi, 9, 546.
  4. Ahmed,N.A. et al. (2023) Safety assessment of Enterococcus lactis strains complemented with comparative genomics analysis reveals probiotic and safety characteristics of the entire species. BMC Genomics, 24, 667.
  5. Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome (2023) Proceedings of the National Academy of Sciences, 120, e2122467120.
  6. Alvandi,H. et al. (2023) Pathovar-Specific PCR Method for Detection and Identification of Xanthomonas translucens pv. undulosa. Plant Disease.
  7. Ambros,C.L. and Ehrmann,M.A. (2023) Distribution, inducibility, and characteristics of Latilactobacillus curvatus temperate phages. Microbiome Research Reports, 2, 34.
  8. Anbazhagan,S. et al. (2023) Comparative genomics of Brucella abortus and Brucella melitensis unravels the gene sharing, virulence factors and SNP diversity among the standard, vaccine and field strains. International Microbiology.
  9. Andrade,L. et al. (2023) Assessing Antimicrobial and Metal Resistance Genes in Escherichia Coli from Domestic Groundwater Supplies in Rural Ireland. SSRN Electronic Journal.
  10. Annor,S.D. et al. (2023) Melibiose–X-Gal–MacConkey Agar for Presumptive Differentiation of Escherichia albertii from E. coli and Salmonella from Poultry Meat. Applied Microbiology, 3, 119–130.
  11. Apostolakos,I. et al. (2023) Genomic and Phenotypic Characterization of Mastitis-Causing Staphylococci and Probiotic Lactic Acid Bacteria Isolated from Raw Sheep’s Milk. International Journal of Molecular Sciences, 24, 13883.
  12. Arcari,G. et al. (2023) Ceftazidime–avibactam resistance in Klebsiella pneumoniae sequence type 37: a decade of persistence and concealed evolution. Microbial Genomics, 9, 000931.
  13. Arcari,G. et al. (2023) Genotypic Evolution of Klebsiella pneumoniae Sequence Type 512 during Ceftazidime/Avibactam, Meropenem/Vaborbactam, and Cefiderocol Treatment, Italy. Emerging Infectious Diseases, 29, 2266.
  14. Arcari,G. et al. (2023) Multiplicity of blaKPC Genes and pKpQIL Plasmid Plasticity in the Development of Ceftazidime-Avibactam and Meropenem Coresistance in Klebsiella pneumoniae Sequence Type 307. Antimicrobial Agents and Chemotherapy, 0, e00368–23.
  15. Aribisala,J.O. et al. (2023) Cheminformatics identification of phenolics as modulators of key penicillin−binding proteins of Escherichia coli towards interventive antibacterial therapy. Molecular Simulation, 0, 1–17.
  16. Arnold,N.D. et al. (2023) Isolation, biochemical characterization, and genome sequencing of two high‐quality genomes of a novel chitinolytic Jeongeupia species. MicrobiologyOpen, 12, e1372.
  17. Bafna,A. et al. (2023) Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock. Genome Research, genome;gr.277581.122v2.
  18. Baig,D.I. et al. (2023) Genome-wide identification and comparative in-silico characterization of β-galactosidase (GH-35) in ascomycetes and its role in germ tube development of Aspergillus fumigatus via RNA-seq analysis. PLOS ONE, 18, e0286428.
  19. Silva,I. Batista da et al. (2023) Discovery of putative long non-coding RNAs expressed in the eyes of Astyanax mexicanus (Actinopterygii: Characidae). Scientific Reports, 13, 12051.
  20. Bazukyan,I. et al. (2023) In Silico Probiogenomic Characterization of Lactobacillus delbrueckii subsp. lactis A4 Strain Isolated from an Armenian Honeybee Gut. Insects, 14, 540.
  21. Beck,C. et al. (2023) Trimannose-coupled antimiR-21 for macrophage-targeted inhalation treatment of acute inflammatory lung damage. Nature Communications, 14, 4564.
  22. Beerling,D. et al. (2023) Enhanced weathering in the U.S. Corn Belt delivers carbon removal with agronomic benefits.
  23. Belair,M. et al. (2023) Botryosphaeriaceae gene machinery: Correlation between diversity and virulence. Fungal Biology, 127, 1010–1031.
  24. Ben-Oz,B.M. et al. (2023) A dual role of RBM42 in modulating splicing and translation of CDKN1A/p21 during DNA damage response. Nature Communications, 14, 7628.
  25. Bennett-Keki,S. et al. (2023) Sex-biased gene expression in nutrient-sensing pathways. Proceedings of the Royal Society B: Biological Sciences, 290, 20222086.
  26. Bennett-Keki,S. et al. (2023) Sex-biased gene expression in nutrient-sensing pathways. Proceedings of the Royal Society B: Biological Sciences, 290, 20222086.
  27. Bordel,S. et al. (2023) Genome sequence analysis and characterization of Bacillus altitudinis B12, a polylactic acid- and keratin-degrading bacterium. Molecular Genetics and Genomics, 298, 389–398.
  28. Bordel,S. et al. (2023) Genome sequence analysis and characterization of Bacillus altitudinis B12, a polylactic acid- and keratin-degrading bacterium. Molecular Genetics and Genomics, 298, 389–398.
  29. Boutigny,A.-L. et al. (2023) Direct Xylella fastidiosa whole genome sequencing from various plant species using targeted enrichment. Journal of Microbiological Methods, 208, 106719.
  30. Braga,P.R.C. et al. (2023) Detection and genomic characterization of a multidrug-resistant Salmonella Newport co-harbouring blaCMY-2, qnrB19 and mcr-9 from the diarrheic faeces of a foal. Journal of Global Antimicrobial Resistance, 35, 198–201.
  31. Breidenbach,J.D. (2023) Harmful Algal Bloom Toxin Aerosol Exposure and Airway Inflammation.
  32. Broche,J. et al. (2023) Genome-wide deposition of 6-methyladenine in human DNA reduces the viability of HEK293 cells and directly influences gene expression. Communications Biology, 6, 1–12.
  33. Brück,P. et al. (2023) Ploidy in Vibrio natriegens: Very Dynamic and Rapidly Changing Copy Numbers of Both Chromosomes. Genes, 14, 1437.
  34. Bruno,F. et al. (2023) Collisions of RNA polymerases behind the replication fork promote alternative RNA splicing in newly replicated chromatin. Molecular Cell, S1097–2765(23)01012–2.
  35. Buchacher,T. et al. (2023) PIM kinases regulate early human Th17 cell differentiation. Cell Reports, 42, 113469.
  36. Camargo,C.H. et al. (2023) Genomic analysis and antimicrobial activity of β-lactam/β-lactamase inhibitors and other agents against KPC-producing Klebsiella pneumoniae clinical isolates from Brazilian hospitals. Scientific Reports, 13, 14603.
  37. Camargo,C.H. et al. (2023) Genomics and Antimicrobial Susceptibility of Clinical Pseudomonas aeruginosa Isolates from Hospitals in Brazil. Pathogens, 12, 918.
  38. Capitani,V. et al. (2023) Genome-Based Retrospective Analysis of a Providencia stuartii Outbreak in Rome, Italy: Broad Spectrum IncC Plasmids Spread the NDM Carbapenemase within the Hospital. Antibiotics, 12, 943.
  39. Capra,E. et al. (2023) CpG DNA methylation changes during epididymal sperm maturation in bulls. Epigenetics & Chromatin, 16, 20.
  40. Chanama,M. et al. (2023) Comparative genome features and secondary metabolite biosynthetic potential of Kutzneria chonburiensis and other species of the genus Kutzneria. Scientific Reports, 13, 8794.
  41. USP7/Maged1-mediated H2A monoubiquitination in the paraventricular thalamus: an epigenetic mechanism involved in cocaine use disorder (2023) Nature Communications, 14, 8481.
  42. Cherrad,S. et al. (2023) New insights from short and long reads sequencing to explore cytochrome b variants in Plasmopara viticola populations collected from vineyards and related to resistance to complex III inhibitors. PLOS ONE, 18, e0268385.
  43. Cigana,K.\textless1994\textgreater (2023) Monitoraggio della comunità microbiologica durante un processo di fermentazione anaerobica di scarti vitivinicoli.
  44. Corneo,A. (2023) Proceedings of 2023 International Camellia Congress in Italy.
  45. Cosenza-Contreras,M. et al. (2023) Proteometabolomics of initial and recurrent glioblastoma highlights an increased immune cell signature with altered lipid metabolism. Neuro-Oncology, noad208.
  46. Davasaz Tabrizi,E. et al. (2023) Bioinformatic challenge on prostate cancer and urinary microbiome. Revista Latinoamericana de Hipertensión, 18, 266–273.
  47. Andrade,T.S. de et al. (2023) Whole genome sequencing of Bacillus anthracis isolated from animal in the 1960s, Brazil, belonging to the South America subclade. Comparative Immunology, Microbiology and Infectious Diseases, 100, 102027.
  48. Jesus Bertani,A.M. de et al. (2023) Whole genome sequence analysis of the first reported isolate of Salmonella Agona carrying blaCTX-M-55 gene in Brazil. Scientific Reports, 13, 2299.
  49. Carmo Santos,M.L. do et al. (2023) Proteomics analysis reveals three potential cacao target that interacts with Moniliophthora perniciosa NEP during witches broom disease. Physiological and Molecular Plant Pathology, 124, 101946.
  50. Dziuba,M.V. et al. (2023) Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium. The ISME Journal, 17, 326–339.
  51. Emser,S.V. et al. (2023) Mitochondrial polymorphism m.3017C\textgreaterT of SHLP6 relates to heterothermy. Frontiers in Physiology, 14.
  52. Esha,N.J.I. et al. (2023) Exploring the potential of fluoro-flavonoid derivatives as anti-lung cancer agents: DFT, molecular docking, and molecular dynamics techniques. International Journal of Quantum Chemistry, n/a, e27274.
  53. Farias,K.S. et al. (2023) BASIDIN as a New Protein Effector of the Phytopathogen Causing Witche’s Broom Disease in Cocoa. International Journal of Molecular Sciences, 24, 11714.
  54. Farmiloe,G. et al. (2023) Structural Evolution of Gene Promoters Driven by Primate-Specific KRAB Zinc Finger Proteins. Genome Biology and Evolution, 15, evad184.
  55. Fatima,A. and Khan,M.A. (2023) Book of Abstracts of the 1st Colloquium for Bioinformatics Learning, Education, and Training. F1000Research, 12, 70.
  56. Fernández-Díaz,M. et al. (2023) Draft Genome Sequence of an Isolate of Genotype VII Newcastle Disease Virus Isolated from an Outbreak in Fighting Cock in Peru. Microbiology Resource Announcements, 12, e01293–22.
  57. Ferreira,T. (2023) Avaliação da expressão diferencial em Physcomitrium patens na busca das adaptações moleculares responsivas na arquitetura dos órgãos reprodutivos.
  58. Figiel,M. et al. (2023) Zinc controls operator affinity of human transcription factor YY1 by mediating dimerization via its N-terminal region. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1866, 194905.
  59. Fischer,S. et al. (2023) Peptide-mediated inhibition of the transcriptional regulator Elongin BC induces apoptosis in cancer cells. Cell Chemical Biology, 30, 766–779.e11.
  60. Gains,A.F. et al. (2023) Identification of a Czc-like operon of the periodontal pathobiont P. gingivalis involved in metal ion efflux. Anaerobe, 80, 102696.
  61. Galgano,M. et al. (2023) Pilot Study on the Action of Thymus vulgaris Essential Oil in Treating the Most Common Bacterial Contaminants and Salmonella enterica subsp. enterica Serovar Derby in Poultry Litter. Antibiotics, 12, 436.
  62. Goossens,P. et al. (2023) Obligate biotroph downy mildew consistently induces near-identical protective microbiomes in Arabidopsis thaliana. Nature Microbiology, 8, 2349–2364.
  63. Gosch,A. et al. (2023) Spitting in the wind?—The challenges of RNA sequencing for biomarker discovery from saliva. International Journal of Legal Medicine.
  64. Guerler,A. et al. (2023) Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy. BMC Bioinformatics, 24, 263.
  65. Gussak,A. et al. (2023) Precision Genome Engineering in Streptococcus suis Based on a Broad-Host-Range Vector and CRISPR-Cas9 Technology. ACS Synthetic Biology.
  66. Han,Z. et al. (2023) DNA-directed termination of RNA polymerase II transcription. Molecular Cell, 83, 3253–3267.e7.
  67. Härdtner,C. et al. (2023) A comparative gene expression matrix in Apoe-deficient mice identifies unique and atherosclerotic disease stage-specific gene regulation patterns in monocytes and macrophages. Atherosclerosis, 371, 1–13.
  68. Hedhly,A. et al. (2023) S-Locus Genotyping in Japanese Plum by High Throughput Sequencing Using a Synthetic S-Loci Reference Sequence. International Journal of Molecular Sciences, 24, 3932.
  69. Heß,D. et al. (2023) The impact of salt stress on the physiology and the transcriptome of the model streptophyte green alga Chara braunii. Physiologia Plantarum, 175, e14123.
  70. Heß,D. et al. (2023) Insight into the nodal cells transcriptome of the streptophyte green alga Chara braunii S276. Physiologia Plantarum, 175, e14025.
  71. Hodzhev,Y. (2023) Analysis of blood microbiome dysbiosis in pulmonary sarcoidosis by decision tree model. Biotechnology & Biotechnological Equipment, 37, 2283133.
  72. Hosseinzadeh,S. and Hasanpur,K. (2023) Gene expression networks and functionally enriched pathways involved in the response of domestic chicken to acute heat stress. Frontiers in Genetics, 14.
  73. Howard,M. et al. (2023) Complete genome sequence of a human bacteremia isolate of Kalamiella piersonii. Microbiology Resource Announcements, 0, e00293–23.
  74. Huang,Y.-H. et al. (2023) A translational regulator MHZ9 modulates ethylene signaling in rice. Nature Communications, 14, 4674.
  75. Huszarik,M. et al. (2023) External DNA contamination and efficiency of bleach decontamination for arthropod diet analysis. Environmental DNA, 5, 540–550.
  76. Ilikkan,Ö. (2023) Laktik Asit Bakterilerinde Tetrasiklin Direncinin Fenotipik ve Tüm Genom Dizilerinde in silico Genotipik Olarak Araştırılması. Journal of the Institute of Science and Technology, 13, 932–940.
  77. Iniesta-Pallarés,M. et al. (2023) Changes in rice rhizosphere and bulk soil bacterial communities in the Doñana wetlands at different growth stages. Applied Soil Ecology, 190, 105013.
  78. Ioos,R. et al. (2023) Harnessing the power of comparative genomics to support the distinction of sister species within Phyllosticta and development of highly specific detection of Phyllosticta citricarpa causing citrus black spot by real-time PCR. PeerJ, 11, e16354.
  79. Izquierdo-Lara,R.W. et al. (2023) Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance. Science of The Total Environment, 873, 162209.
  80. izzo,annalisa et al. (2023) Nucleophosmin 1 cooperates with the methyltransferase DOT1L to regulate H3K79me2 levels and DNA satellites expression at peri-nucleolar heterochromatin In Review.
  81. Jaki,L. et al. (2023) Total escape of SARS-CoV-2 from dual monoclonal antibody therapy in an immunocompromised patient. Nature Communications, 14, 1999.
  82. Javed,M. et al. (2023) Unraveling the transcriptional network regulated by miRNAs in blast-resistant and blast-susceptible rice genotypes during Magnaporthe oryzae interaction. Gene, 886, 147718.
  83. Jeon,G.-T. et al. (2023) Tailored Multiplex Real-Time RT-PCR with Species-Specific Internal Positive Controls for Detecting SARS-CoV-2 in Canine and Feline Clinical Samples. Animals, 13, 602.
  84. Jesudoss Chelladurai,J.R.J. et al. (2023) Comparative Genomic Analysis and Species Delimitation: A Case for Two Species in the Zoonotic Cestode Dipylidium caninum. Pathogens, 12, 675.
  85. Jhinjharia,D. et al. (2023) A high-throughput structural dynamics approach for identification of potential agonists of FFAR4 for type 2 diabetes mellitus therapy. Journal of Biomolecular Structure and Dynamics, 0, 1–21.
  86. Kandinov,I. et al. (2023) Azithromycin Susceptibility Testing and Molecular Investigation of Neisseria gonorrhoeae Isolates Collected in Russia, 2020–2021. Antibiotics, 12, 170.
  87. Kandinov,I. et al. (2023) Emergence of Azithromycin-Resistant Neisseria gonorrhoeae Isolates Belonging to the NG-MAST Genogroup 12302 in Russia. Microorganisms, 11, 1226.
  88. Karthik,K. et al. (2023) Foremost report of the whole genome of Spirabiliibacterium mucosae from India and comparative genomics of the novel genus Spirabiliibacterium. Gene, 867, 147359.
  89. Kefi,A. (2023) Improving the Human Genome Annotation Using Integrative Analysis and Deep Learning Methods.
  90. Khan,U.M. et al. (2023) Comparative phylogenomic insights of KCS and ELO gene families in Brassica species indicate their role in seed development and stress responsiveness. Scientific Reports, 13, 3577.
  91. Khine,N.O. et al. (2023) Comparative genomic analysis of Colistin resistant Escherichia coli isolated from pigs, a human and wastewater on colistin withdrawn pig farm. Scientific Reports, 13, 5124.
  92. Kmeli,N. et al. (2023) Genome-wide characterization of Ficus carica MADS-box transcription factors with a focus on their roles during fruit development. Horticulture, Environment, and Biotechnology.
  93. Kocsmár,É. et al. (2023) Proteome alterations in human autopsy tissues in relation to time after death. Cellular and Molecular Life Sciences, 80, 117.
  94. Kohler,D. et al. (2023) MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments. Journal of Proteome Research, 22, 551–556.
  95. Lamas,A. et al. (2023) Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp. serotyping, virulence, and antimicrobial resistance gene identification. Frontiers in Microbiology, 14.
  96. Lapadula,W.J. and Juri Ayub,M. (2023) Ribosome inactivating proteins in insects: HGT, gene expression, and functional implications. Gene, 877, 147547.
  97. Le Corre,L. and Padovani,D. (2023) Mechanism-based and computational modeling of hydrogen sulfide biogenesis inhibition: interfacial inhibition. Scientific Reports, 13, 7287.
  98. Lenz,M. et al. (2023) The Amyloid Precursor Protein Regulates Synaptic Transmission at Medial Perforant Path Synapses. Journal of Neuroscience, 43, 5290–5304.
  99. Lenz,M. et al. (2023) Denervated mouse CA1 pyramidal neurons express homeostatic synaptic plasticity following entorhinal cortex lesion. Frontiers in Molecular Neuroscience, 16.
  100. Li,Y. et al. (2023) Proteogenomic data and resources for pan-cancer analysis. Cancer Cell, 41, 1397–1406.
  101. Liu,L. et al. (2023) A comprehensive review of bioinformatics tools for chromatin loop calling. Briefings in Bioinformatics, bbad072.
  102. Livingstone,M. et al. (2023) De Novo Whole-Genome Sequencing of Two Pathogenic Pasteurella multocida Type D:6 Strains Isolated from Pigs. Microbiology Resource Announcements, 12, e00098–23.
  103. Maki,J.J. et al. (2023) Species Delineation and Comparative Genomics within the Campylobacter ureolyticus Complex. Journal of Clinical Microbiology, 61, e00046–23.
  104. Manna,P.T. et al. (2023) Endosomal vesicle fusion machinery is involved with the contractile vacuole in Dictyostelium discoideum. Journal of Cell Science, 136, jcs260477.
  105. Mathlouthi,N.E.H. et al. (2023) Colorectal Cancer Archaeome: A Metagenomic Exploration, Tunisia. Current Issues in Molecular Biology, 45, 7572–7581.
  106. Mathura,S.R. et al. (2023) Characterization and expression analysis of SnRK2, PYL, and ABF/ AREB/ ABI5 gene families in sweet potato. PLOS ONE, 18, e0288481.
  107. Mathura,S.R. et al. (2023) Genome-wide Identification of the Auxin Transporter Gene Families in Sweet Potato (Ipomoea batatas) and their Expression During Tuberization. Tropical Plant Biology.
  108. Mehta,S. et al. (2023) A Galaxy of informatics resources for MS-based proteomics. Expert Review of Proteomics, 0, 1–16.
  109. Métris,K.L. and Métris,J. (2023) Aircraft surveys for air eDNA: probing biodiversity in the sky. PeerJ, 11, e15171.
  110. Mohamed,N.A. et al. (2023) Candidate miRNAs from Oryza sativa for Silencing the Rice Tungro Viruses. Agriculture, 13, 651.
  111. Mohebifar,H. et al. (2023) Construction and analysis of pseudogene-related ceRNA network in breast cancer. Scientific Reports, 13, 21874.
  112. Moris,V.C. et al. (2023) Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera. Communications Biology, 6, 1–15.
  113. Myacheva,K. et al. (2023) CRISPRi screening identifies CASP8AP2 as an essential viability factor in lung cancer controlling tumor cell death via the AP-1 pathway. Cancer Letters, 552, 215958.
  114. Nielsen,C.M. et al. (2023) Delayed boosting improves human antigen-specific Ig and B cell responses to the RH5.1/AS01_\textrmB malaria vaccine. JCI Insight, 8.
  115. Characterization of the Italian population of Ciborinia camelliae (2023).
  116. Proceedings of the Joint 3rd International Conference on Bioinformatics and Data Science (ICBDS 2022), ISBN 9789464631630 - Better Read Than Dead Bookstore Newtown (2023).
  117. Oger,F. et al. (2023) β-Cell–Specific E2f1 Deficiency Impairs Glucose Homeostasis, β-Cell Identity, and Insulin Secretion. Diabetes, 72, 1112–1126.
  118. Ohta,T. and Shiwa,Y. (2023) Hybrid Genome Assembly of Short and Long Reads in Galaxy. In, Arakawa,K. (ed), Nanopore Sequencing: Methods and Protocols, Methods in Molecular Biology. Springer US, New York, NY, pp. 15–30.
  119. Olagoke,O.C. et al. (2023) RPS6 transcriptional modulation in neural tissues of Nauphoeta cinerea during streptozotocin-associated sugar metabolism impairment. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 263, 110785.
  120. Oliveira,M.I.B.de et al. (2023) Cocoa apoplastome contains defense proteins against pathogens. https://doi.org/10.1094/PHYTO-03-23-0101-R.
  121. Palecanda,S. et al. (2023) Increasing complexity of opsin expression across stomatopod development. Ecology and Evolution, 13, e10121.
  122. Palecanda,S. et al. (2023) Molecular Evolution of Malacostracan Short Wavelength Sensitive Opsins. Journal of Molecular Evolution.
  123. Pannhorst,K. et al. (2023) The non-classical major histocompatibility complex II protein SLA-DM is crucial for African swine fever virus replication. Scientific Reports, 13, 10342.
  124. Patel,U. et al. (2023) Bioprospecting phytochemicals of Rosmarinus officinalis L. for targeting SARS-CoV-2 main protease (Mpro): a computational study. Journal of Molecular Modeling, 29, 161.
  125. Pelos,G. et al. (2023) Fast proliferating and slowly migrating non-small cell lung cancer cells are vulnerable to decitabine and retinoic acid combinatorial treatment. International Journal of Cancer.
  126. Peschel,C. (2023) Molekulare Mechanismen der pharmakologischen Resistenz kolorektaler Karzinomzelllinien gegen das Chemotherapieregime FOLFIRI.
  127. Phillip,S. et al. (2023) Molecular Characterizations of the Coagulase-Negative Staphylococci Species Causing Urinary Tract Infection in Tanzania: A Laboratory-Based Cross-Sectional Study. Pathogens, 12, 180.
  128. Pimentel,L.G.P. et al. (2023) Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes). Genomics & Informatics, 21, e51.
  129. Plaza,D.F. et al. (2023) A genomic platform for surveillance and antigen discovery in Plasmodium spp. using long-read amplicon sequencing. Cell Reports Methods, 0.
  130. Potgieter,M.G. et al. (2023) MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets. PLOS Computational Biology, 19, e1011163.
  131. Pustam,A. et al. (2023) Comparative genomics and virulome analysis reveal unique features associated with clinical strains of Klebsiella pneumoniae and Klebsiella quasipneumoniae from Trinidad, West Indies. PLOS ONE, 18, e0283583.
  132. Rapp,J. et al. (2023) STAT3 signaling induced by the IL-6 family of cytokines modulates angiogenesis. Journal of Cell Science, 136, jcs260182.
  133. Rehm,T.M. (2023) Analyse des Replikationszyklus von nicht-melanozytären Hautkrebs-assoziierten beta-humanen Papillomviren in humanen Keratinozyten.
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  135. Ristinmaa,A.S. et al. (2023) Resin acids play key roles in shaping microbial communities during degradation of spruce bark. Nature Communications, 14, 8171.
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2022

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2021

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2019

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2018

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  12. Weise,S.C. et al. (2018) FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult Hippocampus. Molecular Neurobiology.
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2017

  1. Grüning,B.A. et al. (2017) The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Research, 45, W560–W566.
  2. Wołkowicz,T. (2017) The utility and perspectives of NGS-based methods in BSL-3 and BSL-4 laboratory – sequencing and analysis strategies. Briefings in Functional Genomics.