Scientific research using & citing the European Galaxy server


This is the list of scientific publications that cited the European Galaxy instance sorted by year. Please help us to support this project with your acknowledgement.

2024

  1. Aguirre Pranzoni,C. et al. (2024) Biofoams with Untapped Enzymatic Potential Produced from Beer Bagasse by Indigenous Fungal Strains.
  2. Akpinar,Z. and Karaoglu,H. (2024) Characterization of a highly thermostable recombinant xylanase from Anoxybacillus ayderensis. Protein Expression and Purification, 219, 106478.
  3. Alawi,M. et al. (2024) Private and well drinking water are reservoirs for antimicrobial resistant bacteria. npj Antimicrobials and Resistance, 2, 1–16.
  4. AlJindan,R. et al. (2024) Phenomics and genomic features of Enterococcus avium IRMC1622a isolated from a clinical sample of hospitalized patient. Journal of Infection and Public Health.
  5. Andriyanov,P.A. et al. (2024) Genomic analysis of multidrug-resistant Delftia tsuruhatensis isolated from raw bovine milk. Frontiers in Microbiology, 14.
  6. Arai,H. et al. (2024) Two male-killing Wolbachia from Drosophila birauraia that are closely related but distinct in genome structure. Royal Society Open Science, 11, 231502.
  7. Aribisala,J.O. et al. (2024) In silico exploration of phenolics as modulators of penicillin binding protein (PBP) 2× of Streptococcus pneumoniae. Scientific Reports, 14, 8788.
  8. Arnold,N.D. (2024) Unlocking a Potent Chitin Saccharification System in a Novel Bacterium Through Omics and Bioinformatics.
  9. Bahrami,B. et al. (2024) Integrated analysis of transcriptome and epigenome reveals ENSR00000272060 as a potential biomarker in gastric cancer. Epigenomics, 16, 159–173.
  10. Bastide,H. et al. (2024) The genome of the blind bee louse fly reveals deep convergences with its social host and illuminates Drosophila origins. Current Biology.
  11. Bawin,T. et al. (2024) Cuscuta campestris fine-tunes gene expression during haustoriogenesis as an adaptation to different hosts. Plant Physiology, 194, 258–273.
  12. Beerling,D.J. et al. (2024) Enhanced weathering in the US Corn Belt delivers carbon removal with agronomic benefits. Proceedings of the National Academy of Sciences, 121, e2319436121.
  13. Berlanga,M. et al. (2024) Biodiversity and poten al func onality of biofilmsediment biotope in La Muerte lagoon, Monegros desert, Spain. Frontiers in Ecology and Evolution, 12.
  14. Bianconi,I. et al. (2024) Characterization of Verona Integron-Encoded Metallo-β-Lactamase-Type Carbapenemase-Producing Escherichia coli Isolates Collected over a 16-Year Period in Bolzano (Northern Italy). Microbial Drug Resistance, 30, 91–100.
  15. Bihani,S. et al. (2024) Metaproteomics for Coinfections in the Upper Respiratory Tract: The Case of COVID-19. In, Salerno,C. (ed), Metaproteomics: Methods and Protocols. Springer US, New York, NY, pp. 165–185.
  16. Bode,C. et al. (2024) Catecholamine treatment induces reversible heart injury and cardiomyocyte gene expression. Intensive Care Medicine Experimental, 12, 48.
  17. Bode,C. et al. (2024) Dynamics of cardiomyocyte gene expression and reversibility of catecholamine-induced heart injury.
  18. Boeckman,J. et al. (2024) Phage DNA Extraction, Genome Assembly, and Genome Closure. In, Tumban,E. (ed), Bacteriophages: Methods and Protocols, Methods in Molecular Biology. Springer US, New York, NY, pp. 125–144.
  19. Boyer,T. and Neronov,A. (2024) Pulsar timing array constraints on the cosmological magnetic field from quark confinement epoch.
  20. Camacho-Beltrán,E. et al. (2024) Complete genome sequence of the Microbacterium enclense bacteriophage phiMiGM15. Microbiology Resource Announcements, 0, e00302–24.
  21. Candeliere,F. et al. (2024) Genomic and functional analysis of the mucinolytic species Clostridium celatum, Clostridium tertium, and Paraclostridium bifermentans. Frontiers in Microbiology, 15.
  22. Carval,T. et al. (2024) Pangeo environment in Galaxy Earth System supported by Fair-Ease Copernicus Meetings.
  23. Castellana,S. et al. (2024) Pannonibacter anstelovis sp. nov. Isolated from Two Cases of Bloodstream Infections in Paediatric Patients. Microorganisms, 12, 799.
  24. Ceylan,F. et al. (2024) Whole-genome resequencing identifies exonic single-nucleotide variations in terpenoid biosynthesis genes of the medicinal and aromatic plant common sage (Salvia officinalis L.). Genetic Resources and Crop Evolution.
  25. Chetverikov,P.E. et al. (2024) Molecular Phylogenetics and Light Microscopy Reveal “True” and “False” Calacarines and Novel Genital Structures in Gall Mites (Acariformes, Eriophyoidea). Forests, 15, 329.
  26. Choudalakis,M. et al. (2024) RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats. Mobile DNA, 15, 6.
  27. Cosenza-Contreras,M. et al. (2024) Proteometabolomics of initial and recurrent glioblastoma highlights an increased immune cell signature with altered lipid metabolism. Neuro-Oncology, 26, 488–502.
  28. Crespo,R. et al. (2024) PCID2 dysregulates transcription and viral RNA processing to promote HIV-1 latency. iScience, 27, 109152.
  29. Croney,K. (2024) Revealing Binding and Unbinding Pathways of Small Molecules and Peptides to Enzymes with Enhanced Sampling Methods. WWU Graduate School Collection.
  30. Darino,M. et al. (2024) Identification and functional characterisation of a locus for target site integration in Fusarium graminearum. Fungal Biology and Biotechnology, 11, 2.
  31. Azevedo,B.L. de et al. (2024) The genomic and phylogenetic analysis of Marseillevirus cajuinensis raises questions about the evolution of Marseilleviridae lineages and their taxonomical organization. Journal of Virology, 0, e00513–24.
  32. Souza,F.D. de et al. (2024) Mitochondrial genome of Hancornia speciosa gomes: intergenic regions containing retrotransposons and predicted genes. Molecular Biology Reports, 51, 132.
  33. Souza,Y.P.A. de et al. (2024) The seeds of Plantago lanceolata comprise a stable core microbiome along a plant richness gradient. Environmental Microbiome, 19, 11.
  34. Dederichs,T.-S. et al. (2024) Nonpreferential but Detrimental Accumulation of Macrophages With Clonal Hematopoiesis-Driver Mutations in Cardiovascular Tissues—Brief Report. Arteriosclerosis, Thrombosis, and Vascular Biology, 44, 690–697.
  35. Dehghanian,F. et al. (2024) ZFP982 confers mouse embryonic stem cell characteristics by regulating expression of Nanog, Zfp42, and Dppa3. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1871, 119686.
  36. Delandre,O. et al. (2024) Long-Read Sequencing and De Novo Genome Assembly Pipeline of Two Plasmodium falciparum Clones (Pf3D7, PfW2) Using Only the PromethION Sequencer from Oxford Nanopore Technologies without Whole-Genome Amplification. Biology, 13, 89.
  37. Deng,L. et al. (2024) Atlas of cardiac endothelial cell enhancer elements linking the mineralocorticoid receptor to pathological gene expression. Science Advances, 10, eadj5101.
  38. Deng,L. et al. (2024) Massively parallel CRISPR-assisted homologous recombination enables saturation editing of full-length endogenous genes in yeast. Science Advances, 10, eadj9382.
  39. Depari,E.K. et al. (2024) Long-read datasets of Kayu Bawang (Azadirachta excelsa (Jack) Jacobs) from 3 different identified seed stands in Bengkulu (Sumatra), Indonesia and its phylogenetic relationships.
  40. Donátová,K. et al. (2024) Changes in the Expression of Proteins Associated with Neurodegeneration in the Brains of Mice after Infection with Influenza A Virus with Wild Type and Truncated NS1. International Journal of Molecular Sciences, 25, 2460.
  41. Dossmann,L. et al. (2024) Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons. Communications Biology, 7, 1–12.
  42. Edet,O.U. et al. (2024) Genomic analysis of a spontaneous unifoliate mutant reveals gene candidates associated with compound leaf development in Vigna unguiculata [L] Walp. Scientific Reports, 14, 10654.
  43. Eggenhofer,F. and Siederdissen,C. Höner zu (2024) Evolutionary Structure Conservation and Covariance Scores. In, Lorenz,R. (ed), RNA Folding: Methods and Protocols. Springer US, New York, NY, pp. 255–284.
  44. Ehle,C. et al. (2024) Downregulation of HNF4A enables transcriptomic reprogramming during the hepatic acute-phase response. Communications Biology, 7, 1–14.
  45. Ercole,T.G. et al. (2024) Unveiling Agricultural Biotechnological Prospects: The Draft Genome Sequence of Stenotrophomonas geniculata LGMB417. Current Microbiology, 81, 247.
  46. Ferreira,M.M. et al. (2024) TcSERPIN, an inhibitor that interacts with cocoa defense proteins and has biotechnological potential against human pathogens. Frontiers in Plant Science, 15.
  47. Fischer,J. et al. (2024) Expanding the Scope of Adenoviral Vectors by Utilizing Novel Tools for Recombination and Vector Rescue. Viruses, 16, 658.
  48. Flores Orozco,D. (2024) Evaluation of the long-term effects of anaerobic digestion on bovine manure resistomes and mobilomes and the molecular and microbial mechanisms involved.
  49. Galvis,J. et al. (2024) DIMet: An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data. Bioinformatics (Oxford, England), btae282.
  50. Garcia-Fernandez,A. et al. (2024) Antibiotic resistance, plasmids, and virulence-associated markers in human strains of Campylobacter jejuni and Campylobacter coli isolated in Italy. Frontiers in Microbiology, 14.
  51. Gavalda-Garcia,J. et al. (2024) bio2Byte Tools deployment as a Python package and Galaxy tool to predict protein biophysical properties.
  52. Giufrè,M. et al. (2024) Detection of KPC-216, a Novel KPC-3 Variant, in a Clinical Isolate of Klebsiella pneumoniae ST101 Co-Resistant to Ceftazidime-Avibactam and Cefiderocol. Antibiotics, 13, 507.
  53. Glærum,I.L. et al. (2024) Postnatal persistence of hippocampal Cajal-Retzius cells has a crucial role in the establishment of the hippocampal circuit. Development, 151, dev202236.
  54. Gress,C. et al. (2024) Transcriptomic characterization of the human segmental endotoxin challenge model. Scientific Reports, 14, 1721.
  55. Häkkänen,T. et al. (2024) Molecular characteristics of Cryptosporidium spp. in human cases in five Finnish hospital districts during 2021: first findings of Cryptosporidium mortiferum (Cryptosporidium chipmunk genotype I) in Finland. International Journal for Parasitology, 54, 225–231.
  56. Hecht,H. et al. (2024) Quantum chemistry based prediction of electron ionization mass spectra for environmental chemicals.
  57. Heine,S. et al. (2024) Activation of the aryl hydrocarbon receptor improves allergen-specific immunotherapy of murine allergic airway inflammation: a novel adjuvant option? Frontiers in Immunology, 15.
  58. Herwibawa,B. et al. (2024) Association of a Specific OsCULLIN3c Haplotype with Salt Stress Responses in Local Thai Rice. International Journal of Molecular Sciences, 25, 1040.
  59. Hoffmann,U.A. et al. (2024) The role of the 5’ sensing function of ribonuclease E in cyanobacteria. RNA Biology.
  60. Hossain,M.S. et al. (2024) Evaluation of novel pyridoxal isonicotinoyl hydrazone (PIH) derivatives as potential anti-tuberculosis agents: An in silico investigation. International Journal of Quantum Chemistry, 124, e27381.
  61. Hosseinzadeh,S. and Hasanpur,K. (2024) Whole genome discovery of regulatory genes responsible for the response of chicken to heat stress. Scientific Reports, 14, 6544.
  62. Hwang,H.M. et al. (2024) Reduction of APOE accounts for neurobehavioral deficits in fetal alcohol spectrum disorders. Molecular Psychiatry, 1–17.
  63. Ipoutcha,T. et al. (2024) A synthetic biology approach to assemble and reboot clinically relevant Pseudomonas aeruginosa tailed phages. Microbiology Spectrum, 12, e02897–23.
  64. Ishola,O.A. et al. (2024) Comparative Metagenomic Analysis of Bacteriophages and Prophages in Gnotobiotic Mouse Models. Microorganisms, 12, 255.
  65. Jain,K. and Yadav,R. (2024) Human Metagenome Analysis with COVID-19 Infectious Disease. Current Trends in Biotechnology and Pharmacy, 18, 1616–1628.
  66. Jia,C. et al. (2024) Salmonella phylogenomics. In, Mokrousov,I. and Shitikov,E. (eds), Phylogenomics. Academic Press, pp. 267–281.
  67. Joshi,S. and Srivastava,R. (2024) Physicochemical properties and biological efficacy of 30 DYRK2 Inhibitors for the treatment of prostate cancer. Vietnam Journal of Chemistry, n/a.
  68. Joshi,S. and Srivastava,R. (2024) Tracing the pathways and mechanisms involved in medicinal uses of flaxseed with computational methods and bioinformatics tools. Frontiers in Chemistry, 11.
  69. Jovović,L. et al. (2024) De novo transcriptomes of cave and surface isopod crustaceans: insights from 11 species across three suborders. Scientific Data, 11, 595.
  70. Kahraman-Ilıkkan,Ö. (2024) Comparative genomics of four lactic acid bacteria identified with Vitek MS (MALDI-TOF) and whole-genome sequencing. Molecular Genetics and Genomics, 299, 31.
  71. Kalnytska,O. et al. (2024) SORCS2 activity in pancreatic α-cells safeguards insulin granule formation and release from glucose-stressed β-cells. iScience, 27, 108725.
  72. Kandinov,I. et al. (2024) Mini-Multilocus Sequence Typing Scheme for the Global Population of Neisseria gonorrhoeae. International Journal of Molecular Sciences, 25, 5781.
  73. Kostrykin,L. et al. (2024) Enhancing the image analysis community in Galaxy.
  74. Kruk,M.E. et al. (2024) An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease. mSystems, 0, e00929–23.
  75. Kruse,P. et al. (2024) Synaptopodin Regulates Denervation-Induced Plasticity at Hippocampal Mossy Fiber Synapses. Cells, 13, 114.
  76. Kumawat,K.L. et al. (2024) Association of Reproductive Phenology with Air Temperature in Almond (Prunus dulcis [Mill.] D.A. Webb) Cultivars Under Northwestern Himalayan Conditions. Applied Fruit Science, 66, 581–588.
  77. Lapp,T. et al. (2024) Transcriptional profiling specifies the pathogen-specific human host response to infectious keratitis. Frontiers in Cellular and Infection Microbiology, 13.
  78. Larivière,D. et al. (2024) Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology, 1–4.
  79. Lasolle,H. et al. (2024) Dual targeting of MAPK and PI3K pathways unlocks redifferentiation of Braf-mutated thyroid cancer organoids. Oncogene, 43, 155–170.
  80. Laurette,P. et al. (2024) In Vivo Silencing of Regulatory Elements Using a Single AAV-CRISPRi Vector. Circulation Research, 134, 223–225.
  81. Leavitt,R.J. et al. (2024) Acute Hypoxia Does Not Alter Tumor Sensitivity to FLASH Radiation Therapy. International Journal of Radiation Oncology*Biology*Physics.
  82. Link,T. (2024) Characterization and habitat adaptation of \textlessem\textgreaterTetragenococcus halophilus\textless/em\textgreater and \textlessem\textgreaterDebaryomyces hansenii\textless/em\textgreater from a lupine seasoning sauce fermentation.
  83. López,M.-E. et al. (2024) Epigenomic and transcriptomic persistence of heat stress memory in strawberry (Fragaria vesca). BMC Plant Biology, 24, 405.
  84. Luenstedt,J. et al. (2024) Partial hepatectomy accelerates colorectal metastasis by priming an inflammatory premetastatic niche in the liver. Frontiers in Immunology, 15.
  85. Maffei,E. et al. (2024) Complete genome sequence of Pseudomonas aeruginosa phage Knedl. Microbiology Resource Announcements, 13, e01174–23.
  86. McCluskey,K. et al. (2024) Predicting the Identities of su(met-2) and met-3 in Neurospora crassa by Genome Resequencing. Fungal Genetics Reports, 67.
  87. McVey,D.G. et al. (2024) Genetic influence on vascular smooth muscle cell apoptosis. Cell Death & Disease, 15, 1–12.
  88. Meem,M.H. et al. (2024) Exploring the anticancer and antibacterial potential of naphthoquinone derivatives: a comprehensive computational investigation. Frontiers in Chemistry, 12.
  89. Mérida-Cerro,J.A. et al. (2024) Rat1 promotes premature transcription termination at R-loops. Nucleic Acids Research, 52, 3623–3635.
  90. Merz,M. et al. (2024) Characterization of the major autolysin (AtlC) of Staphylococcus carnosus. BMC Microbiology, 24, 77.
  91. Miranda,S. et al. (2024) Assessment and Partial Characterization of Candidate Genes in Dihydrochalcone and Arbutin Biosynthesis in an Apple–Pear Hybrid by De Novo Transcriptome Assembly. Journal of Agricultural and Food Chemistry.
  92. Moris,V.C. et al. (2024) Ionizing radiation responses appear incidental to desiccation responses in the bdelloid rotifer Adineta vaga. BMC Biology, 22, 11.
  93. Mostafa,K. et al. (2024) Genome-wide analysis of PvMADS in common bean and functional characterization of PvMADS31 in Arabidopsis thaliana as a player in abiotic stress responses. The Plant Genome, 17, e20432.
  94. Müller,T. et al. (2024) CheRRI—Accurate classification of the biological relevance of putative RNA–RNA interaction sites. GigaScience, 13, giae022.
  95. Nicholson,T.L. et al. (2024) The contribution of BvgR, RisA, and RisS to global gene regulation, intracellular cyclic-di-GMP levels, motility, and biofilm formation in Bordetella bronchiseptica. Frontiers in Microbiology, 15.
  96. Candidatus Methanosphaera massiliense sp. nov., a methanogenic archaeal species found in a human fecal sample and prevalent in pigs and red kangaroos \textbar Microbiology Spectrum (2024).
  97. Effect of Anti‐S100A4 Monoclonal Antibody Treatment on Experimental Skin Fibrosis and Systemic Sclerosis–Specific Transcriptional Signatures in Human Skin - Trinh‐Minh - 2024 - Arthritis & Rheumatology - Wiley Online Library (2024).
  98. Nutrients \textbar Free Full-Text \textbar A 14-Day Double-Blind, Randomized, Controlled Crossover Intervention Study with Anti-Bacterial Benzyl Isothiocyanate from Nasturtium (Tropaeolum majus) on Human Gut Microbiome and Host Defense (2024).
  99. Nugroho,A. et al. (2024) Transcriptome dataset of gall-rust infected Sengon (Falcataria falcata) seedlings using long-read PCR-cDNA sequencing. Data in Brief, 52, 109919.
  100. Nwankwo,C.C. et al. (2024) Metagenomic Study of Bacteria Diversity and Functional Profile in Bulk and Rhizosphere Soils of Fusarium-Wilt Infected Plantain (Musa paradisiaca). Journal of Advances in Microbiology, 24, 77–93.
  101. Oakes,B.J. et al. (2024) Building Domain-Specific Machine Learning Workflows: A Conceptual Framework for the State of the Practice. ACM Transactions on Software Engineering and Methodology, 33, 91:1–91:50.
  102. Oliveira,T.T. et al. (2024) Integrated analysis of RNA-seq datasets reveals novel targets and regulators of COVID-19 severity. Life Science Alliance, 7.
  103. Ostenfeld,L.J. et al. (2024) A hybrid receptor binding protein enables phage F341 infection of Campylobacter by binding to flagella and lipooligosaccharides. Frontiers in Microbiology, 15.
  104. Pachanon,R. et al. (2024) Genomic characterization of carbapenem and colistin-resistant Klebsiella pneumoniae isolates from humans and dogs. Frontiers in Veterinary Science, 11.
  105. Palacios-Rodriguez,A.P. et al. (2024) Antimicrobial Activity of Bacillus amyloliquefaciens BS4 against Gram-Negative Pathogenic Bacteria. Antibiotics, 13, 304.
  106. Pazoki,N. et al. (2024) Elucidating the impact of Y chromosome microdeletions and altered gene expression on male fertility in assisted reproduction. Human Molecular Genetics, ddae086.
  107. Pérez-Sisqués,L. et al. (2024) The Intellectual Disability Risk Gene Kdm5b Regulates Long-Term Memory Consolidation in the Hippocampus. Journal of Neuroscience, 44.
  108. Pfäffle,S.P. et al. (2024) A 14-Day Double-Blind, Randomized, Controlled Crossover Intervention Study with Anti-Bacterial Benzyl Isothiocyanate from Nasturtium (Tropaeolum majus) on Human Gut Microbiome and Host Defense. Nutrients, 16, 373.
  109. Pick,K. et al. (2024) Complete genome sequence of Escherichia coli MP1. Microbiology Resource Announcements, 0, e01216–23.
  110. Pilliol,V. et al. (2024) Methanobrevibacter massiliense and Pyramidobacter piscolens Co-Culture Illustrates Transkingdom Symbiosis. Microorganisms, 12, 215.
  111. Pinto,D. et al. (2024) Rescue of Mycobacterium bovis DNA Obtained from Cultured Samples during Official Surveillance of Animal TB: Key Steps for Robust Whole Genome Sequence Data Generation. International Journal of Molecular Sciences, 25, 3869.
  112. Pirnay,J.-P. et al. (2024) Personalized bacteriophage therapy outcomes for 100 consecutive cases: a multicentre, multinational, retrospective observational study. Nature Microbiology, 9, 1434–1453.
  113. Pustam,A. et al. (2024) Whole genome sequencing reveals complex resistome features of Klebsiella pneumoniae isolated from patients at major hospitals in Trinidad, West Indies. Journal of Global Antimicrobial Resistance.
  114. Pyles,R.B. et al. (2024) The altered TBI fecal microbiome is stable and functionally distinct. Frontiers in Molecular Neuroscience, 17.
  115. Qiu,X. et al. (2024) SmCYP71D373 of Salvia miltiorrhiza catalyzes the methyl oxidation reaction of tanshinone IIA-19 position. Industrial Crops and Products, 212, 118323.
  116. Rahman,N. et al. (2024) Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses. Microbial Genomics, 10, 001188.
  117. Ramos,B. and Cunha,M.V. (2024) The mobilome of Staphylococcus aureus from wild ungulates reveals epidemiological links at the animal-human interface. Environmental Pollution, 124241.
  118. Rapp,J. et al. (2024) Oncostatin M Reduces Pathological Neovascularization in the Retina Through Müller Cell Activation. Investigative Ophthalmology & Visual Science, 65, 22.
  119. Robson,J.K. et al. (2024) Environmental regulation of male fertility is mediated through Arabidopsis transcription factors bHLH89, 91, and 10. Journal of Experimental Botany, 75, 1934–1947.
  120. Royaux,C. et al. (2024) Genetic variability of New Caledonian Boeckella De Guerne & Richard, 1889 (Copepoda: Calanoida), with the description of a new species. Journal of Crustacean Biology, 44, ruae001.
  121. Sabala,R.F. et al. (2024) Carbapenem and colistin-resistant hypervirulent Klebsiella pneumoniae: An emerging threat transcending the egyptian food chain. Journal of Infection and Public Health, 17, 1037–1046.
  122. Sageman-Furnas,K. et al. (2024) Detailing Early Shoot Growth Arrest in Kro-0 x BG-5 Hybrids of Arabidopsis thaliana. Plant and Cell Physiology, 65, 420–427.
  123. Salapa,H.E. et al. (2024) hnRNP A1 dysfunction alters RNA splicing and drives neurodegeneration in multiple sclerosis (MS). Nature Communications, 15, 356.
  124. Sarkar,P. et al. (2024) Insights on the comparative affinity of ribonucleic acids with plant-based beta carboline alkaloid, harmine: Spectroscopic, calorimetric and computational evaluation. Heliyon, 0.
  125. Schmidt,C. et al. (2024) A practical guide to bioimaging research data management in core facilities. Journal of Microscopy, 294, 350–371.
  126. Sethi,R. et al. (2024) ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists. Nature Communications, 15, 5600.
  127. Silva,F.J. et al. (2024) Comparative Transcriptomics of Fat Bodies between Symbiotic and Quasi-Aposymbiotic Adult Females of Blattella germanica with Emphasis on the Metabolic Integration with Its Endosymbiont Blattabacterium and Its Immune System. International Journal of Molecular Sciences, 25, 4228.
  128. Singh,P. et al. (2024) Biophysical and structural characterization of tetramethrin serum protein complex and its toxicological implications. Journal of Molecular Recognition, n/a, e3076.
  129. Soggia,G. et al. (2024) Bioelectrochemical protein production valorizing NH3-rich pig manure-derived wastewater and CO2 from anaerobic digestion. Renewable Energy, 120761.
  130. Soleau,N. et al. (2024) First Isolation of the Heteropathotype Shiga Toxin-Producing and Extra-Intestinal Pathogenic (STEC-ExPEC) E. coli O80:H2 in French Healthy Cattle: Genomic Characterization and Phylogenetic Position. International Journal of Molecular Sciences, 25, 5428.
  131. Stillger,M.N. et al. (2024) Neoadjuvant chemo- or chemo-radiation-therapy of pancreatic ductal adenocarcinoma differentially shift ECM composition, complement activation, energy metabolism and ribosomal proteins of the residual tumor mass. International Journal of Cancer, 154, 2162–2175.
  132. Stojkovic,L. et al. (2024) Targeted RNAseq Revealed the Gene Expression Signature of Ferroptosis-Related Processes Associated with Disease Severity in Patients with Multiple Sclerosis. International Journal of Molecular Sciences, 25, 3016.
  133. Strateva,T. and Peykov,S. (2024) First detection of a cefiderocol-resistant and extensively drug-resistant Acinetobacter baumannii clinical isolate in Bulgaria. Acta Microbiologica et Immunologica Hungarica, -1.
  134. Tetzlaff,S. et al. (2024) Small RNAs from mitochondrial genome recombination sites are incorporated into T. gondii mitoribosomes. eLife, 13, e95407.
  135. Thompson,R.M. et al. (2024) Draft genome sequences of five Mycobacterium strains, isolated from Alnus glutinosa root nodules. Microbiology Resource Announcements, 13, e01132–23.
  136. Thongbunrod,N. and Chaiprasert,P. (2024) Potential of enriched and stabilized anaerobic lignocellulolytic fungi coexisting with bacteria and methanogens for enhanced methane production from rice straw. Biomass Conversion and Biorefinery, 14, 8229–8250.
  137. Toth,R. et al. (2024) Divergence within the Taxon ‘Candidatus Phytoplasma asteris’ Confirmed by Comparative Genome Analysis of Carrot Strains. Microorganisms, 12, 1016.
  138. Tóth,K. et al. (2024) Genomic Epidemiology of C2/H30Rx and C1-M27 Subclades of Escherichia coli ST131 Isolates from Clinical Blood Samples in Hungary. Antibiotics, 13, 363.
  139. Trinh-Minh,T. et al. (2024) Effect of Anti-S100A4 Monoclonal Antibody Treatment on Experimental Skin Fibrosis and Systemic Sclerosis–Specific Transcriptional Signatures in Human Skin. Arthritis and Rheumatology, 76, 783–795.
  140. Ummethum,H. (2024) Proximity labeling as a tool to study transcription-replication interference.
  141. Umpeleva,T. et al. (2024) Identification of genetic determinants of bedaquiline resistance in Mycobacterium tuberculosis in Ural region, Russia. Microbiology Spectrum, 12, e03749–23.
  142. Vieira Da Cruz,A. et al. (2024) Pyridylpiperazine efflux pump inhibitor boosts in vivo antibiotic efficacy against K. pneumoniae. EMBO Molecular Medicine, 16, 93–111.
  143. Vieira,T. et al. (2024) Polymyxin Resistance in Salmonella: Exploring Mutations and Genetic Determinants of Non-Human Isolates. Antibiotics, 13, 110.
  144. Volkova,P. et al. (2024) Multi-omics responses of barley seedlings to low and high linear energy transfer irradiation. Environmental and Experimental Botany, 218, 105600.
  145. Vozenin,M.-C. et al. (2024) More May Not be Better: Enhanced Spacecraft Shielding May Exacerbate Cognitive Decrements by Increasing Pion Exposures during Deep Space Exploration. Radiation Research, 201, 93–103.
  146. Wang,Y.-H. et al. (2024) The Genome of Arsenophonus sp. and Its Potential Contribution in the Corn Planthopper, Peregrinus maidis. Insects, 15, 113.
  147. Wang,L. et al. (2024) Growth, Enzymatic, and Transcriptomic Analysis of xyr1 Deletion Reveals a Major Regulator of Plant Biomass-Degrading Enzymes in Trichoderma harzianum. Biomolecules, 14, 148.
  148. Watson,S. et al. (2024) Modification of Seurat v4 for the Development of a Phase Assignment Tool Able to Distinguish between G2 and Mitotic Cells. International Journal of Molecular Sciences, 25, 4589.
  149. Wight,J. et al. (2024) Anthropogenic contamination sources drive differences in antimicrobial-resistant Escherichia coli in three urban lakes. Applied and Environmental Microbiology, 90, e01809–23.
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2022

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2021

  1. Aggarwal,D. et al. (2021) The role of viral genomics in understanding COVID-19 outbreaks in long-term care facilities. The Lancet Microbe.
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2019

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2018

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2017

  1. Grüning,B.A. et al. (2017) The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Research, 45, W560–W566.
  2. Wołkowicz,T. (2017) The utility and perspectives of NGS-based methods in BSL-3 and BSL-4 laboratory – sequencing and analysis strategies. Briefings in Functional Genomics.