Scientific research using & citing the European Galaxy server

This is the list of scientific publications that cited the European Galaxy instance sorted by year. Please help us to support this project with your acknowledgement.


  1. В,С.М. et al. (2023) ВЫЧИСЛИТЕЛЬНЫЙ АНАЛИЗ СТРУКТУРНОГО CОСТАВА ГЕНОМОВ КОРОНАВИРУСОВ. Доклады Белорусского государственного университета информатики и радиоэлектроники, 21, 104–113.
  2. Ahmad,N. et al. (2023) Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. Journal of Fungi, 9, 546.
  3. Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome (2023) Proceedings of the National Academy of Sciences, 120, e2122467120.
  4. Alvandi,H. et al. (2023) Pathovar-Specific PCR Method for Detection and Identification of Xanthomonas translucens pv. undulosa. Plant Disease.
  5. Anbazhagan,S. et al. (2023) Comparative genomics of Brucella abortus and Brucella melitensis unravels the gene sharing, virulence factors and SNP diversity among the standard, vaccine and field strains. International Microbiology.
  6. Andrade,L. et al. (2023) Assessing Antimicrobial and Metal Resistance Genes in Escherichia Coli from Domestic Groundwater Supplies in Rural Ireland. SSRN Electronic Journal.
  7. Annor,S.D. et al. (2023) Melibiose–X-Gal–MacConkey Agar for Presumptive Differentiation of Escherichia albertii from E. coli and Salmonella from Poultry Meat. Applied Microbiology, 3, 119–130.
  8. Arcari,G. et al. (2023) Ceftazidime–avibactam resistance in Klebsiella pneumoniae sequence type 37: a decade of persistence and concealed evolution. Microbial Genomics, 9, 000931.
  9. Arcari,G. et al. (2023) Multiplicity of blaKPC Genes and pKpQIL Plasmid Plasticity in the Development of Ceftazidime-Avibactam and Meropenem Coresistance in Klebsiella pneumoniae Sequence Type 307. Antimicrobial Agents and Chemotherapy, 0, e00368–23.
  10. Aribisala,J.O. et al. (2023) Cheminformatics identification of phenolics as modulators of key penicillin−binding proteins of Escherichia coli towards interventive antibacterial therapy. Molecular Simulation, 0, 1–17.
  11. Arnold,N.D. et al. (2023) Isolation, biochemical characterization, and genome sequencing of two high‐quality genomes of a novel chitinolytic Jeongeupia species. MicrobiologyOpen, 12, e1372.
  12. Bafna,A. et al. (2023) Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock. Genome Research, genome;gr.277581.122v2.
  13. Baig,D.I. et al. (2023) Genome-wide identification and comparative in-silico characterization of β-galactosidase (GH-35) in ascomycetes and its role in germ tube development of Aspergillus fumigatus via RNA-seq analysis. PLOS ONE, 18, e0286428.
  14. Silva,I. Batista da et al. (2023) Discovery of putative long non-coding RNAs expressed in the eyes of Astyanax mexicanus (Actinopterygii: Characidae). Scientific Reports, 13, 12051.
  15. Bazukyan,I. et al. (2023) In Silico Probiogenomic Characterization of Lactobacillus delbrueckii subsp. lactis A4 Strain Isolated from an Armenian Honeybee Gut. Insects, 14, 540.
  16. Beck,C. et al. (2023) Trimannose-coupled antimiR-21 for macrophage-targeted inhalation treatment of acute inflammatory lung damage. Nature Communications, 14, 4564.
  17. Beerling,D. et al. (2023) Enhanced weathering in the U.S. Corn Belt delivers carbon removal with agronomic benefits.
  18. Bennett-Keki,S. et al. (2023) Sex-biased gene expression in nutrient-sensing pathways. Proceedings of the Royal Society B: Biological Sciences, 290, 20222086.
  19. Bordel,S. et al. (2023) Genome sequence analysis and characterization of Bacillus altitudinis B12, a polylactic acid- and keratin-degrading bacterium. Molecular Genetics and Genomics, 298, 389–398.
  20. Boutigny,A.-L. et al. (2023) Direct Xylella fastidiosa whole genome sequencing from various plant species using targeted enrichment. Journal of Microbiological Methods, 208, 106719.
  21. Breidenbach,J.D. (2023) Harmful Algal Bloom Toxin Aerosol Exposure and Airway Inflammation.
  22. Broche,J. et al. (2023) Genome-wide deposition of 6-methyladenine in human DNA reduces the viability of HEK293 cells and directly influences gene expression. Communications Biology, 6, 1–12.
  23. Brück,P. et al. (2023) Ploidy in Vibrio natriegens: Very Dynamic and Rapidly Changing Copy Numbers of Both Chromosomes. Genes, 14, 1437.
  24. Camargo,C.H. et al. (2023) Genomic analysis and antimicrobial activity of β-lactam/β-lactamase inhibitors and other agents against KPC-producing Klebsiella pneumoniae clinical isolates from Brazilian hospitals. Scientific Reports, 13, 14603.
  25. Camargo,C.H. et al. (2023) Genomics and Antimicrobial Susceptibility of Clinical Pseudomonas aeruginosa Isolates from Hospitals in Brazil. Pathogens, 12, 918.
  26. Capitani,V. et al. (2023) Genome-Based Retrospective Analysis of a Providencia stuartii Outbreak in Rome, Italy: Broad Spectrum IncC Plasmids Spread the NDM Carbapenemase within the Hospital. Antibiotics, 12, 943.
  27. Capra,E. et al. (2023) CpG DNA methylation changes during epididymal sperm maturation in bulls. Epigenetics & Chromatin, 16, 20.
  28. Chanama,M. et al. (2023) Comparative genome features and secondary metabolite biosynthetic potential of Kutzneria chonburiensis and other species of the genus Kutzneria. Scientific Reports, 13, 8794.
  29. Cherrad,S. et al. (2023) New insights from short and long reads sequencing to explore cytochrome b variants in Plasmopara viticola populations collected from vineyards and related to resistance to complex III inhibitors. PLOS ONE, 18, e0268385.
  30. Cigana,K.\textless1994\textgreater (2023) Monitoraggio della comunità microbiologica durante un processo di fermentazione anaerobica di scarti vitivinicoli.
  31. Corneo,A. (2023) Proceedings of 2023 International Camellia Congress in Italy.
  32. Andrade,T.S. de et al. (2023) Whole genome sequencing of Bacillus anthracis isolated from animal in the 1960s, Brazil, belonging to the South America subclade. Comparative Immunology, Microbiology and Infectious Diseases, 100, 102027.
  33. Jesus Bertani,A.M. de et al. (2023) Whole genome sequence analysis of the first reported isolate of Salmonella Agona carrying blaCTX-M-55 gene in Brazil. Scientific Reports, 13, 2299.
  34. Carmo Santos,M.L. do et al. (2023) Proteomics analysis reveals three potential cacao target that interacts with Moniliophthora perniciosa NEP during witches broom disease. Physiological and Molecular Plant Pathology, 124, 101946.
  35. Dziuba,M.V. et al. (2023) Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium. The ISME Journal, 17, 326–339.
  36. Emser,S.V. et al. (2023) Mitochondrial polymorphism m.3017C\textgreaterT of SHLP6 relates to heterothermy. Frontiers in Physiology, 14.
  37. Farias,K.S. et al. (2023) BASIDIN as a New Protein Effector of the Phytopathogen Causing Witche’s Broom Disease in Cocoa. International Journal of Molecular Sciences, 24, 11714.
  38. Fatima,A. and Khan,M.A. (2023) Book of Abstracts of the 1st Colloquium for Bioinformatics Learning, Education, and Training. F1000Research, 12, 70.
  39. Fernández-Díaz,M. et al. (2023) Draft Genome Sequence of an Isolate of Genotype VII Newcastle Disease Virus Isolated from an Outbreak in Fighting Cock in Peru. Microbiology Resource Announcements, 12, e01293–22.
  40. Ferreira,T. (2023) Avaliação da expressão diferencial em Physcomitrium patens na busca das adaptações moleculares responsivas na arquitetura dos órgãos reprodutivos.
  41. Figiel,M. et al. (2023) Zinc controls operator affinity of human transcription factor YY1 by mediating dimerization via its N-terminal region. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1866, 194905.
  42. Fischer,S. et al. (2023) Peptide-mediated inhibition of the transcriptional regulator Elongin BC induces apoptosis in cancer cells. Cell Chemical Biology, 30, 766–779.e11.
  43. Gains,A.F. et al. (2023) Identification of a Czc-like operon of the periodontal pathobiont P. gingivalis involved in metal ion efflux. Anaerobe, 80, 102696.
  44. Galgano,M. et al. (2023) Pilot Study on the Action of Thymus vulgaris Essential Oil in Treating the Most Common Bacterial Contaminants and Salmonella enterica subsp. enterica Serovar Derby in Poultry Litter. Antibiotics, 12, 436.
  45. Guerler,A. et al. (2023) Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy. BMC Bioinformatics, 24, 263.
  46. Gussak,A. et al. (2023) Precision Genome Engineering in Streptococcus suis Based on a Broad-Host-Range Vector and CRISPR-Cas9 Technology. ACS Synthetic Biology.
  47. Härdtner,C. et al. (2023) A comparative gene expression matrix in Apoe-deficient mice identifies unique and atherosclerotic disease stage-specific gene regulation patterns in monocytes and macrophages. Atherosclerosis, 371, 1–13.
  48. Hedhly,A. et al. (2023) S-Locus Genotyping in Japanese Plum by High Throughput Sequencing Using a Synthetic S-Loci Reference Sequence. International Journal of Molecular Sciences, 24, 3932.
  49. Hosseinzadeh,S. and Hasanpur,K. (2023) Gene expression networks and functionally enriched pathways involved in the response of domestic chicken to acute heat stress. Frontiers in Genetics, 14.
  50. Howard,M. et al. (2023) Complete genome sequence of a human bacteremia isolate of Kalamiella piersonii. Microbiology Resource Announcements, 0, e00293–23.
  51. Huszarik,M. et al. (2023) External DNA contamination and efficiency of bleach decontamination for arthropod diet analysis. Environmental DNA, 5, 540–550.
  52. Ilikkan,Ö. (2023) Laktik Asit Bakterilerinde Tetrasiklin Direncinin Fenotipik ve Tüm Genom Dizilerinde in silico Genotipik Olarak Araştırılması. Journal of the Institute of Science and Technology, 13, 932–940.
  53. Iniesta-Pallarés,M. et al. (2023) Changes in rice rhizosphere and bulk soil bacterial communities in the Doñana wetlands at different growth stages. Applied Soil Ecology, 190, 105013.
  54. izzo,annalisa et al. (2023) Nucleophosmin 1 cooperates with the methyltransferase DOT1L to regulate H3K79me2 levels and DNA satellites expression at peri-nucleolar heterochromatin In Review.
  55. Jaki,L. et al. (2023) Total escape of SARS-CoV-2 from dual monoclonal antibody therapy in an immunocompromised patient. Nature Communications, 14, 1999.
  56. Jeon,G.-T. et al. (2023) Tailored Multiplex Real-Time RT-PCR with Species-Specific Internal Positive Controls for Detecting SARS-CoV-2 in Canine and Feline Clinical Samples. Animals, 13, 602.
  57. Jesudoss Chelladurai,J.R.J. et al. (2023) Comparative Genomic Analysis and Species Delimitation: A Case for Two Species in the Zoonotic Cestode Dipylidium caninum. Pathogens, 12, 675.
  58. Kandinov,I. et al. (2023) Azithromycin Susceptibility Testing and Molecular Investigation of Neisseria gonorrhoeae Isolates Collected in Russia, 2020–2021. Antibiotics, 12, 170.
  59. Kandinov,I. et al. (2023) Emergence of Azithromycin-Resistant Neisseria gonorrhoeae Isolates Belonging to the NG-MAST Genogroup 12302 in Russia. Microorganisms, 11, 1226.
  60. Karthik,K. et al. (2023) Foremost report of the whole genome of Spirabiliibacterium mucosae from India and comparative genomics of the novel genus Spirabiliibacterium. Gene, 867, 147359.
  61. Kefi,A. (2023) Improving the Human Genome Annotation Using Integrative Analysis and Deep Learning Methods.
  62. Khan,U.M. et al. (2023) Comparative phylogenomic insights of KCS and ELO gene families in Brassica species indicate their role in seed development and stress responsiveness. Scientific Reports, 13, 3577.
  63. Khine,N.O. et al. (2023) Comparative genomic analysis of Colistin resistant Escherichia coli isolated from pigs, a human and wastewater on colistin withdrawn pig farm. Scientific Reports, 13, 5124.
  64. Kmeli,N. et al. (2023) Genome-wide characterization of Ficus carica MADS-box transcription factors with a focus on their roles during fruit development. Horticulture, Environment, and Biotechnology.
  65. Kocsmár,É. et al. (2023) Proteome alterations in human autopsy tissues in relation to time after death. Cellular and Molecular Life Sciences, 80, 117.
  66. Kohler,D. et al. (2023) MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments. Journal of Proteome Research, 22, 551–556.
  67. Lapadula,W.J. and Juri Ayub,M. (2023) Ribosome inactivating proteins in insects: HGT, gene expression, and functional implications. Gene, 877, 147547.
  68. Le Corre,L. and Padovani,D. (2023) Mechanism-based and computational modeling of hydrogen sulfide biogenesis inhibition: interfacial inhibition. Scientific Reports, 13, 7287.
  69. Lenz,M. et al. (2023) The Amyloid Precursor Protein Regulates Synaptic Transmission at Medial Perforant Path Synapses. Journal of Neuroscience, 43, 5290–5304.
  70. Lenz,M. et al. (2023) Denervated mouse CA1 pyramidal neurons express homeostatic synaptic plasticity following entorhinal cortex lesion. Frontiers in Molecular Neuroscience, 16.
  71. Liu,L. et al. (2023) A comprehensive review of bioinformatics tools for chromatin loop calling. Briefings in Bioinformatics, bbad072.
  72. Livingstone,M. et al. (2023) De Novo Whole-Genome Sequencing of Two Pathogenic Pasteurella multocida Type D:6 Strains Isolated from Pigs. Microbiology Resource Announcements, 12, e00098–23.
  73. Maki,J.J. et al. (2023) Species Delineation and Comparative Genomics within the Campylobacter ureolyticus Complex. Journal of Clinical Microbiology, 61, e00046–23.
  74. Manna,P.T. et al. (2023) Endosomal vesicle fusion machinery is involved with the contractile vacuole in Dictyostelium discoideum. Journal of Cell Science, 136, jcs260477.
  75. Mathlouthi,N.E.H. et al. (2023) Colorectal Cancer Archaeome: A Metagenomic Exploration, Tunisia. Current Issues in Molecular Biology, 45, 7572–7581.
  76. Mathura,S.R. et al. (2023) Genome-wide Identification of the Auxin Transporter Gene Families in Sweet Potato (Ipomoea batatas) and their Expression During Tuberization. Tropical Plant Biology.
  77. Métris,K.L. and Métris,J. (2023) Aircraft surveys for air eDNA: probing biodiversity in the sky. PeerJ, 11, e15171.
  78. Mohamed,N.A. et al. (2023) Candidate miRNAs from Oryza sativa for Silencing the Rice Tungro Viruses. Agriculture, 13, 651.
  79. Moris,V.C. et al. (2023) Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera. Communications Biology, 6, 1–15.
  80. Myacheva,K. et al. (2023) CRISPRi screening identifies CASP8AP2 as an essential viability factor in lung cancer controlling tumor cell death via the AP-1 pathway. Cancer Letters, 552, 215958.
  81. Nielsen,C.M. et al. (2023) Delayed boosting improves human antigen-specific Ig and B cell responses to the RH5.1/AS01_\textrmB malaria vaccine. JCI Insight, 8.
  82. Characterization of the Italian population of Ciborinia camelliae (2023).
  83. Proceedings of the Joint 3rd International Conference on Bioinformatics and Data Science (ICBDS 2022), ISBN 9789464631630 - Better Read Than Dead Bookstore Newtown (2023).
  84. Oger,F. et al. (2023) β-Cell–Specific E2f1 Deficiency Impairs Glucose Homeostasis, β-Cell Identity, and Insulin Secretion. Diabetes, 72, 1112–1126.
  85. Ohta,T. and Shiwa,Y. (2023) Hybrid Genome Assembly of Short and Long Reads in Galaxy. In, Arakawa,K. (ed), Nanopore Sequencing: Methods and Protocols, Methods in Molecular Biology. Springer US, New York, NY, pp. 15–30.
  86. Olagoke,O.C. et al. (2023) RPS6 transcriptional modulation in neural tissues of Nauphoeta cinerea during streptozotocin-associated sugar metabolism impairment. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 263, 110785.
  87. Palecanda,S. et al. (2023) Increasing complexity of opsin expression across stomatopod development. Ecology and Evolution, 13, e10121.
  88. Pannhorst,K. et al. (2023) The non-classical major histocompatibility complex II protein SLA-DM is crucial for African swine fever virus replication. Scientific Reports, 13, 10342.
  89. Patel,U. et al. (2023) Bioprospecting phytochemicals of Rosmarinus officinalis L. for targeting SARS-CoV-2 main protease (Mpro): a computational study. Journal of Molecular Modeling, 29, 161.
  90. Peschel,C. (2023) Molekulare Mechanismen der pharmakologischen Resistenz kolorektaler Karzinomzelllinien gegen das Chemotherapieregime FOLFIRI.
  91. Phillip,S. et al. (2023) Molecular Characterizations of the Coagulase-Negative Staphylococci Species Causing Urinary Tract Infection in Tanzania: A Laboratory-Based Cross-Sectional Study. Pathogens, 12, 180.
  92. Plaza,D.F. et al. (2023) A genomic platform for surveillance and antigen discovery in Plasmodium spp. using long-read amplicon sequencing. Cell Reports Methods, 0.
  93. Potgieter,M.G. et al. (2023) MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets. PLOS Computational Biology, 19, e1011163.
  94. Pustam,A. et al. (2023) Comparative genomics and virulome analysis reveal unique features associated with clinical strains of Klebsiella pneumoniae and Klebsiella quasipneumoniae from Trinidad, West Indies. PLOS ONE, 18, e0283583.
  95. Rapp,J. et al. (2023) STAT3 signaling induced by the IL-6 family of cytokines modulates angiogenesis. Journal of Cell Science, 136, jcs260182.
  96. Rehm,T.M. (2023) Analyse des Replikationszyklus von nicht-melanozytären Hautkrebs-assoziierten beta-humanen Papillomviren in humanen Keratinozyten.
  97. Reyes,B.M.D. et al. (2023) Characterization of the microbiota dynamics associated with Moniliophthora roreri, causal agent of cocoa frosty pod rot disease, reveals new viral species. Frontiers in Microbiology, 13.
  98. Roux,H.M. et al. (2023) DNA ultra-sensitive quantification, a technology for studying HIV unintegrated linear DNA. Cell Reports Methods, 3, 100443.
  99. Sánchez-León,I. et al. (2023) Heteroresistance to Colistin in Clinical Isolates of Klebsiella pneumoniae Producing OXA-48. Antibiotics, 12, 1111.
  100. Schiml,V.C. et al. (2023) Integrative meta-omics in Galaxy and beyond. Environmental Microbiome, 18, 56.
  101. Schüle,K.M. et al. (2023) Eomes restricts Brachyury functions at the onset of mouse gastrulation. Developmental Cell, 0.
  102. Schwabenland,M. et al. (2023) Neonatal immune challenge poses a sex-specific risk for epigenetic microglial reprogramming and behavioral impairment. Nature Communications, 14, 2721.
  103. Seckin Dinler,B. et al. (2023) The regulation of glutathione s-transferases by gibberellic acid application in salt treated maize leaves. Physiology and Molecular Biology of Plants, 29, 69–85.
  104. Semenzato,G. et al. (2023) Genomic, Molecular, and Phenotypic Characterization of Arthrobacter sp. OVS8, an Endophytic Bacterium Isolated from and Contributing to the Bioactive Compound Content of the Essential Oil of the Medicinal Plant Origanum vulgare L. International Journal of Molecular Sciences, 24, 4845.
  105. Senft,R.A. et al. (2023) A biologist’s guide to planning and performing quantitative bioimaging experiments. PLOS Biology, 21, e3002167.
  106. Sharaf,A. et al. (2023) Bridging the gap in African biodiversity genomics and bioinformatics. Nature Biotechnology, 41, 1348–1354.
  107. Sheikh,T.M.M. et al. (2023) Volatile Organic Compounds Emitted by the Biocontrol Agent Pythium oligandrum Contribute to Ginger Plant Growth and Disease Resistance. Microbiology Spectrum, 0, e01510–23.
  108. Shi,S. et al. (2023) Modeling bile duct ischemia and reoxygenation injury in human cholangiocyte organoids for screening of novel cholangio-protective agents. eBioMedicine, 88, 104431.
  109. Siatra,P. et al. (2023) Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart. npj Regenerative Medicine, 8, 1–15.
  110. Soorni,A. et al. (2023) Genome-wide screening and characterization of long noncoding RNAs involved in flowering/bolting of Lactuca sativa. BMC Plant Biology, 23, 3.
  111. Spanò,R. et al. (2023) Comparative Analysis of Bioactive Compounds in Two Globe Artichoke Ecotypes Sanitized and Non-Sanitized from Viral Infections. Plants, 12, 1600.
  112. Strateva,T. et al. (2023) Analysis of biofilm formation in nosocomial Stenotrophomonas maltophilia isolates collected in Bulgaria: An 11-year study (2011–2022). Acta Microbiologica et Immunologica Hungarica, 70, 11–21.
  113. Strateva,T. et al. (2023) Genotypic and phenotypic insights into virulence factors of nosocomial Stenotrophomonas maltophilia isolates collected in Bulgaria (2011–2022). Acta Microbiologica et Immunologica Hungarica, -1.
  114. Subramoney,K. et al. (2023) SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022. PLOS ONE, 18, e0286373.
  115. Sundar,S. (2023) In-silico transcriptome analysis of antibiotic-treated Mycobacterium tuberculosis identifies novel antibiotic resistance factors. Indian Journal of Tuberculosis.
  116. Suzuki,M. et al. (2023) Genomic Epidemiological Analysis of Antimicrobial-Resistant Bacteria with Nanopore Sequencing. In, Arakawa,K. (ed), Nanopore Sequencing: Methods and Protocols, Methods in Molecular Biology. Springer US, New York, NY, pp. 227–246.
  117. Tajuddin,S. et al. (2023) Genomic analysis and biological characterization of a novel Schitoviridae phage infecting Vibrio alginolyticus. Applied Microbiology and Biotechnology, 107, 749–768.
  118. Trifonova,A. et al. (2023) Combination of two rare mutations in the SARS-CoV-2 M gene in patients with severe and prolonged COVID-19. Infectious Diseases, 0, 1–5.
  119. Valadez-Moctezuma,E. et al. (2023) The first transcriptomic analyses of fruits and cladodes for comparison between three species of Opuntia. Genetic Resources and Crop Evolution, 70, 951–970.
  120. Valadez-Moctezuma,E. et al. (2023) The de novo transcriptome assembly of Agave angustifolia Haw, mining for carbohydrates and cellulose synthesis genes profiling, and molecular markers development. Plant Biotechnology Reports.
  121. Vergata,C. et al. (2023) How does particulate matter affect plant transcriptome and microbiome? Environmental and Experimental Botany, 209, 105313.
  122. Vitali,F. et al. (2023) Employing Genome Mining to Unveil a Potential Contribution of Endophytic Bacteria to Antimicrobial Compounds in the Origanum vulgare L. Essential Oil. Antibiotics, 12, 1179.
  123. Voelker,J. et al. (2023) The terpene synthase genes of Melaleuca alternifolia (tea tree) and comparative gene family analysis among Myrtaceae essential oil crops. Plant Systematics and Evolution, 309, 13.
  124. Vorobyeva,N.E. et al. (2023) Su(Hw) interacts with Combgap to establish long-range chromatin contacts In Review.
  125. Voronezhskaya,V. et al. (2023) Multi-Omics Analysis of Vicia cracca Responses to Chronic Radiation Exposure in the Chernobyl Exclusion Zone. Plants, 12, 2318.
  126. Vukovikj,M. et al. (2023) In-depth genetic characterization of the SARS-CoV-2 pandemic in a two-year frame in North Macedonia using second and third generation sequencing technologies. Frontiers in Virology, 2.
  127. Wang,J. et al. (2023) A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome. Nature Protocols, 1–28.
  128. Weber,L.M. et al. (2023) The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain. Nucleic Acids Research, 51, 574–594.
  129. Wein,S. (2023) Analysis of RNA Sequences and Modifications Using NASE. In, Oliveira,P.H. (ed), Computational Epigenomics and Epitranscriptomics, Methods in Molecular Biology. Springer US, New York, NY, pp. 225–239.
  130. Werner,J. et al. (2023) Targeted and explorative profiling of kallikrein proteases and global proteome biology of pancreatic ductal adenocarcinoma, chronic pancreatitis, and normal pancreas highlights disease-specific proteome remodelling. Neoplasia, 36, 100871.
  131. Whitmore,L. et al. (2023) Inadvertent human genomic bycatch and intentional capture raise beneficial applications and ethical concerns with environmental DNA. Nature Ecology & Evolution, 1–16.
  132. Williams,S.E. et al. (2023) Discovery and biosynthetic assessment of ’Streptomyces ortus’ sp. nov. isolated from a deep-sea sponge. Microbial Genomics, 9, mgen000996.
  133. Wittke,S. et al. (2023) EODIE — Earth Observation Data Information Extractor. SoftwareX, 23, 101421.
  134. Wolf,J. et al. (2023) Transcriptional Profiling Identifies Prognostic Gene Signatures for Conjunctival Extranodal Marginal Zone Lymphoma. Biomolecules, 13, 115.
  135. Xu,F. et al. (2023) Reprogramming of the transcriptome after heat stress mediates heat hormesis in Caenorhabditis elegans. Nature Communications, 14, 1–16.
  136. Zhang,Z. et al. (2023) NFATc1 Is a Central Mediator of EGFR-Induced ARID1A Chromatin Dissociation During Acinar Cell Reprogramming. Cellular and Molecular Gastroenterology and Hepatology.
  137. Zilbauer,M. et al. (2023) A Roadmap for the Human Gut Cell Atlas. Nature Reviews Gastroenterology & Hepatology, 1–18.
  138. Zinati,Z. and Nazari,L. (2023) Deciphering the molecular basis of abiotic stress response in cucumber (Cucumis sativus L.) using RNA-Seq meta-analysis, systems biology, and machine learning approaches. Scientific Reports, 13, 12942.
  139. Zirngibl,M.-E. et al. (2023) Triose phosphate export from chloroplasts and cellular sugar content regulate anthocyanin biosynthesis during high light acclimation. Plant Communications, 4, 100423.


  1. Achom,M. et al. (2022) Plant circadian clock control of Medicago truncatula nodulation via regulation of nodule cysteine-rich peptides. Journal of Experimental Botany, 73, 2142–2156.
  2. Aciole Barbosa,D. et al. (2022) Transcriptomic Profiling and Microsatellite Identification in Cobia (Rachycentron canadum), Using High-Throughput RNA Sequencing. Marine Biotechnology, 24, 255–262.
  3. Ali,O. et al. (2022) Transcriptome-wide modulation by Sargassum vulgare and Acanthophora spicifera extracts results in a prime-triggered plant signaling cascade in tomato and sweet pepper. AoB PLANTS, plac046.
  4. Ali,O. et al. (2022) Transcriptomic changes induced by applications of a commercial extract of Ascophyllum nodosum on tomato plants. Scientific Reports, 12, 1–13.
  5. Amaral, et al. (2022) TcTI, a Kunitz-type trypsin inhibitor from cocoa associated with defense against pathogens. Scientific Reports, 12.
  6. Arcari,G. et al. (2022) Interplay between Klebsiella pneumoniae producing KPC-31 and KPC-3 under treatment with high dosage meropenem: a case report. European Journal of Clinical Microbiology & Infectious Diseases, 41, 495–500.
  7. Ardisasmita,A.I. et al. (2022) A comprehensive transcriptomic comparison of hepatocyte model systems improves selection of models for experimental use. Communications Biology, 5, 1–15.
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